Basic Information
Gene Model:Bol021001
Gene Family:Not classified
Chromosome:Cun
Scaffold:Scaffold000118_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2131 bp
Transcript Length:1236 bp
Protein Length:411 aa
Strand:-
Location:Scaffold000118_P2: 103058 : 105188
Gene CDSs(3): 1-345 | 1161-1262 | 1343-2131 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 218 229 NANot foundNot found
Segsegseg 152 166 NANot foundNot found
Segsegseg 67 79 NANot foundNot found
HMMPantherPTHR13902SERINE/THREONINE-PRO 1 400 2.1e-176Not foundNot found
HMMPantherPTHR13902:SF5gb def: BHLH transcr 1 400 2.1e-176Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
Q7XJU01e-133Y1462_ARATH Uncharacterized basic helix-loop-helix protein At1g64625 OS=Arabidopsis thaliana GN=At1g64625 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q0WVQ51e-132Q0WVQ5_ARATH Putative uncharacterized protein At1g64625 OS=Arabidopsis thaliana GN=At1g64625 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12638(6 genes,3 taxa):Arabidopsis thalianaAT1G64625.1
ORTHOMCL12638(6 genes,3 taxa):Brassica oleraceaBol020996
ORTHOMCL12638(6 genes,3 taxa):Brassica oleraceaBol021001
ORTHOMCL12638(6 genes,3 taxa):Brassica oleraceaBol021002
ORTHOMCL12638(6 genes,3 taxa):Brassica rapaBra027711
ORTHOMCL12638(6 genes,3 taxa):Brassica rapaBra027718
Tandem Arrays
ClusterGene Num.Gene List
Cluster_14192Bol021001 Bol021002 
Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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