Basic Information
Gene Model:Bol020996
Gene Family:Not classified
Chromosome:Cun
Scaffold:Scaffold000118_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2383 bp
Transcript Length:1539 bp
Protein Length:512 aa
Strand:+
Location:Scaffold000118_P2: 49712 : 52094
Gene CDSs(8): 1-95 | 264-353 | 434-497 | 602-643 | 715-774 | 884-1690 | 1771-1812 | 2045-2383 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 341 352 NANot foundNot found
Segsegseg 190 202 NANot foundNot found
Segsegseg 275 289 NANot foundNot found
HMMPantherPTHR13902SERINE/THREONINE-PRO 14 503 1e-220Not foundNot found
HMMPantherPTHR13902:SF5gb def: BHLH transcr 14 503 1e-220Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
Q7XJU01e-179Y1462_ARATH Uncharacterized basic helix-loop-helix protein At1g64625 OS=Arabidopsis thaliana GN=At1g64625 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SV150.0C0SV15_ARATH Putative uncharacterized protein At1g64625 (Fragment) OS=Arabidopsis thaliana GN=At1g64625 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12638(6 genes,3 taxa):Arabidopsis thalianaAT1G64625.1
ORTHOMCL12638(6 genes,3 taxa):Brassica oleraceaBol020996
ORTHOMCL12638(6 genes,3 taxa):Brassica oleraceaBol021001
ORTHOMCL12638(6 genes,3 taxa):Brassica oleraceaBol021002
ORTHOMCL12638(6 genes,3 taxa):Brassica rapaBra027711
ORTHOMCL12638(6 genes,3 taxa):Brassica rapaBra027718
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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