Basic Information
Gene Model:Bol019747
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:1293 bp
Transcript Length:945 bp
Protein Length:314 aa
Strand:-
Location:C09: 31692128 : 31693420
Gene CDSs(4): 1-234 | 328-614 | 703-1027 | 1195-1293 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 222 314 12.746IPR003340Transcriptional factor B3
ProfileScanPS50863B3 28 125 11.378IPR003340Transcriptional factor B3
Segsegseg 190 206 NANot foundNot found
Segsegseg 146 161 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 9 127 4.9e-16Not foundNot found
Coilcoilcoiled-coil 179 200 NANot foundNot found
HMMPfamPF02362B3 224 312 9.5e-20IPR003340Transcriptional factor B3
HMMPfamPF02362B3 18 127 1.4e-15IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FJG28e-88Y5800_ARATH B3 domain-containing protein At5g18000 OS=Arabidopsis thaliana GN=At5g18000 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8F62e-25Q3E8F6_ARATH Putative uncharacterized protein At5g46915.1 OS=Arabidopsis thaliana GN=At5g46915 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13116(6 genes,3 taxa):Arabidopsis thalianaAT5G18000.1
ORTHOMCL13116(6 genes,3 taxa):Arabidopsis thalianaAT5G18090.1
ORTHOMCL13116(6 genes,3 taxa):Brassica oleraceaBol019747
ORTHOMCL13116(6 genes,3 taxa):Brassica oleraceaBol021386
ORTHOMCL13116(6 genes,3 taxa):Brassica rapaBra002132
ORTHOMCL13116(6 genes,3 taxa):Brassica rapaBra023652
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:27967024..32004612 (+)B.rapaA10:6145708..8231502 (-)258
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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