Basic Information
Gene Model:Bol019052
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:2133 bp
Transcript Length:1173 bp
Protein Length:390 aa
Strand:-
Location:Scaffold000133: 169581 : 171713
Gene CDSs(7): 1-153 | 238-465 | 646-1056 | 1487-1564 | 1669-1728 | 1793-1864 | 1963-2133 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 77 140 2e-05IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 77 109 1.7e-09IPR011616bZIP transcription factor, bZIP-1
ProfileScanPS50217BZIP 79 121 8.634IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 100 128 NANot foundNot found
PatternScanPS00036BZIP_BASIC 84 99 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q392370.0TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9DGG10.0B9DGG1_ARATH AT5G65210 protein OS=Arabidopsis thaliana GN=AT5G65210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G652100.0K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G10030.1
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G65210.2
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol008040
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol009211
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol019052
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol024636
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol043707
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra009063
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra024366
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra028604
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra031871
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra037809
ORTHOMCL1388(18 genes,8 taxa):Vitis viniferaGSVIVT01022200001
ORTHOMCL1388(18 genes,8 taxa):Oryza sativaOs04t0637000-01
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s08370.1
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s06180.1
ORTHOMCL1388(18 genes,8 taxa):Sorghum bicolorSb06g030100.1
ORTHOMCL1388(18 genes,8 taxa):Carica papayaevm.TU.supercontig_100.2
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo