Basic Information
Gene Model:Bol015054
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C03
Scaffold:Scaffold000168
Sequence:
 | 
Gene Structure
Nucleotide Length:1221 bp
Transcript Length:1221 bp
Protein Length:406 aa
Strand:-
Location:C03: 14739333 : 14740553
Gene CDSs(1): 1-1221 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01490Aa_trans 16 397 9e-72IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 4 399 8.3e-102Not foundNot found
Segsegseg 317 334 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
Q495N21e-37S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8GXJ50.0Q8GXJ5_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G382501e-180K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL805(22 genes,8 taxa):Arabidopsis thalianaAT2G42005.1
ORTHOMCL805(22 genes,8 taxa):Arabidopsis thalianaAT4G38250.1
ORTHOMCL805(22 genes,8 taxa):Brassica oleraceaBol000902
ORTHOMCL805(22 genes,8 taxa):Brassica oleraceaBol015054
ORTHOMCL805(22 genes,8 taxa):Brassica rapaBra000591
ORTHOMCL805(22 genes,8 taxa):Brassica rapaBra033558
ORTHOMCL805(22 genes,8 taxa):Vitis viniferaGSVIVT01022294001
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-01
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-02
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-03
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-04
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs02t0670900-05
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs04t0565500-01
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs04t0565500-02
ORTHOMCL805(22 genes,8 taxa):Oryza sativaOs04t0565500-03
ORTHOMCL805(22 genes,8 taxa):Populus trichocarpaPOPTR_0004s21660.1
ORTHOMCL805(22 genes,8 taxa):Populus trichocarpaPOPTR_0005s10530.1
ORTHOMCL805(22 genes,8 taxa):Populus trichocarpaPOPTR_0009s16910.1
ORTHOMCL805(22 genes,8 taxa):Sorghum bicolorSb04g032170.1
ORTHOMCL805(22 genes,8 taxa):Sorghum bicolorSb06g025470.1
ORTHOMCL805(22 genes,8 taxa):Sorghum bicolorSb06g025480.1
ORTHOMCL805(22 genes,8 taxa):Carica papayaevm.TU.supercontig_6.354
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:13895784..16558399 (+)B.rapaA03:15447774..16682343 (+)164
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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