Basic Information
Gene Model:Bol011452
Gene Family:Not classified
Chromosome:C09
Scaffold:Scaffold000211
Sequence:
 | 
Gene Structure
Nucleotide Length:4655 bp
Transcript Length:3165 bp
Protein Length:1054 aa
Strand:+
Location:C09: 460695 : 465349
Gene CDSs(5): 1-808 | 920-1029 | 1513-2175 | 2988-3109 | 3194-4655 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01494ATPase_P-type: ATPas 697 817 3.3e-44IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 303 386 3.4e-25IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 613 663 1.7e-16IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 104 199 3.7e-22IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01116ATPase-IIA1_Ca: calc 59 1040 0IPR005782ATPase, P-type, calcium-transporting
PatternScanPS00154ATPASE_E1_E2 367 373 NAIPR018303ATPase, P-type phosphorylation site
superfamilySSF81653Calcium ATPase, tran 134 249 1e-28Not foundNot found
superfamilySSF81660Metal cation-transpo 374 624 2e-51Not foundNot found
superfamilySSF56784HAD-like 361 780 1.3e-47Not foundNot found
superfamilySSF81665Calcium ATPase, tran 7 1045 1.8e-137Not foundNot found
HMMPantherPTHR11939CATION-TRANSPORTING 11 851 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF91CALCIUM-TRANSPORTING 11 851 0Not foundNot found
HMMPfamPF00702Hydrolase 361 747 1.5e-18IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00689Cation_ATPase_C 808 1038 2.3e-60IPR006068ATPase, P-type cation-transporter, C-terminal
HMMPfamPF00122E1-E2_ATPase 104 357 4.1e-80IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF00690Cation_ATPase_N 2 83 9.1e-34IPR004014ATPase, P-type cation-transporter, N-terminal
Segsegseg 104 117 NANot foundNot found
HMMSmartSM00831no description 9 83 1.8e-21IPR004014ATPase, P-type cation-transporter, N-terminal
Gene3DG3DSA:1.20.1110.10no description 698 1045 3.7e-100Not foundNot found
Gene3DG3DSA:3.40.1110.10no description 375 623 8.9e-55Not foundNot found
Gene3DG3DSA:2.70.150.10no description 7 230 2.8e-42Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005388 Molecular Function calcium-transporting ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0006816 Biological Process calcium ion transport
GO:0008152 Biological Process metabolic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
O230870.0ECA2_ARATH Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1
TrEMBL
Best HitE_value Description
A0A0780.0A0A078_ARATH Endomembrane Ca2+ ATPase 2 (Fragment) OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G009000.0K01537E3.6.3.8Ca2+-transporting ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07670.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07810.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G10130.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT4G00900.1
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol004102
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol006517
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol007671
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol011452
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol031235
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol036766
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol041160
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra019960
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra029645
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031583
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031593
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031701
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra037404
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01009320001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025062001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025583001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01027195001
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-01
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-02
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0730800-01
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0001s23990.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0002s11820.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0009s03070.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s01500.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s09740.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g009225.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g038990.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb09g001850.1
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_114.16
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_139.2
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_142.46
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:125224..502364 (-)A.thalianaChr4:334732..625850 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:190050..568461 (+)B.rapaA10:12901960..13222716 (+)15
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G00900382663386288Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo