Basic Information
Gene Model:Bol010472
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C02
Scaffold:Scaffold000221_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2242 bp
Transcript Length:1326 bp
Protein Length:441 aa
Strand:-
Location:C02: 11616618 : 11618859
Gene CDSs(6): 1-99 | 201-269 | 367-458 | 539-1038 | 1292-1675 | 2061-2242 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 367 381 NANot foundNot found
Segsegseg 263 274 NANot foundNot found
HMMPfamPF01490Aa_trans 29 428 1.2e-157IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 19 441 7.2e-107Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
Q9LRB50.0LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RMN00.0B9RMN0_RICCO Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1081920 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1440391e-13K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT1G24400.1
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT1G48640.1
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT1G67640.1
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT5G40780.1
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol006156
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol010472
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol012940
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol032217
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol036413
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol041752
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra025547
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra028477
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra030024
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra032807
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra033986
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra039087
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01001839001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010331001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010335001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010349001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010351001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010355001
ORTHOMCL214(41 genes,8 taxa):Oryza sativaOs08t0127100-01
ORTHOMCL214(41 genes,8 taxa):Oryza sativaOs08t0127100-02
ORTHOMCL214(41 genes,8 taxa):Oryza sativaOs12t0244400-01
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36330.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36330.2
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36330.3
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36340.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0008s17910.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0010s06590.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0015s10350.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb04g033960.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002230.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002240.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002250.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002260.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb08g009800.1
ORTHOMCL214(41 genes,8 taxa):Carica papayaevm.TU.contig_29648.1
ORTHOMCL214(41 genes,8 taxa):Carica papayaevm.TU.contig_29648.2
ORTHOMCL214(41 genes,8 taxa):Carica papayaevm.TU.supercontig_43.6
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12267878 (+)A.thalianaChr1:25276294..25561212 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12835805 (+)B.rapaA07:4956496..5424555 (-)14
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G676402535212825353908Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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