Basic Information
Gene Model:Bol009211
Gene Family:Transcription Factor Families
Gene Structure
Nucleotide Length:1907 bp
Transcript Length:1104 bp
Protein Length:367 aa
Location:C03: 42496122 : 42498028
Gene CDSs(8): 1-177 | 283-354 | 428-487 | 565-642 | 870-933 | 1014-1285 | 1451-1678 | 1755-1907 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 83 118 0.00038Not foundNot found
ProfileScanPS50217BZIP 81 123 8.772IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 102 130 NANot foundNot found
PatternScanPS00036BZIP_BASIC 86 101 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 79 111 9.8e-11IPR011616bZIP transcription factor, bZIP-1
HMMSmartSM00338no description 79 146 3.9e-06IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Best HitE_value Description
Q392370.0TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2
Best HitE_value Description
B9DGG10.0B9DGG1_ARATH AT5G65210 protein OS=Arabidopsis thaliana GN=AT5G65210 PE=2 SV=1
Best HitE_valueKOEC or Symbol Description
ath:AT5G652100.0K14431TGAtranscription factor TGA
Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G10030.1
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G65210.2
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol008040
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol009211
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol019052
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol024636
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol043707
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra009063
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra024366
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra028604
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra031871
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra037809
ORTHOMCL1388(18 genes,8 taxa):Vitis viniferaGSVIVT01022200001
ORTHOMCL1388(18 genes,8 taxa):Oryza sativaOs04t0637000-01
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s08370.1
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s06180.1
ORTHOMCL1388(18 genes,8 taxa):Sorghum bicolorSb06g030100.1
ORTHOMCL1388(18 genes,8 taxa):Carica papayaevm.TU.supercontig_100.2
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:41746935..43054848 (+)B.rapaA06:16433459..16873496 (+)32
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.