Basic Information
Gene Model:Bol008040
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000252
Sequence:
 | 
Gene Structure
Nucleotide Length:3139 bp
Transcript Length:1143 bp
Protein Length:380 aa
Strand:+
Location:C02: 41716690 : 41719828
Gene CDSs(8): 1-177 | 263-343 | 421-480 | 586-663 | 755-818 | 898-1169 | 1336-1563 | 2957-3139 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 84 126 8.634IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 82 114 9.8e-11IPR011616bZIP transcription factor, bZIP-1
Coilcoilcoiled-coil 112 133 NANot foundNot found
Segsegseg 366 377 NANot foundNot found
Segsegseg 328 340 NANot foundNot found
HMMSmartSM00338no description 82 145 1.7e-06IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 86 114 8.5e-05Not foundNot found
PatternScanPS00036BZIP_BASIC 89 104 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q392371e-173TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9DGG11e-172B9DGG1_ARATH AT5G65210 protein OS=Arabidopsis thaliana GN=AT5G65210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G652101e-173K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G10030.1
ORTHOMCL1388(18 genes,8 taxa):Arabidopsis thalianaAT5G65210.2
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol008040
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol009211
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol019052
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol024636
ORTHOMCL1388(18 genes,8 taxa):Brassica oleraceaBol043707
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra009063
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra024366
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra028604
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra031871
ORTHOMCL1388(18 genes,8 taxa):Brassica rapaBra037809
ORTHOMCL1388(18 genes,8 taxa):Vitis viniferaGSVIVT01022200001
ORTHOMCL1388(18 genes,8 taxa):Oryza sativaOs04t0637000-01
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s08370.1
ORTHOMCL1388(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s06180.1
ORTHOMCL1388(18 genes,8 taxa):Sorghum bicolorSb06g030100.1
ORTHOMCL1388(18 genes,8 taxa):Carica papayaevm.TU.supercontig_100.2
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41565359..42022866 (+)A.thalianaChr5:25955381..26369751 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:41656315..42286250 (+)B.rapaA09:9226386..9717946 (+)32
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G652102605762326061104Chr5Subgenome_II40
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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