Basic Information
Gene Model:Bol006986
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C08
Scaffold:Scaffold000268
Sequence:
 | 
Gene Structure
Nucleotide Length:3869 bp
Transcript Length:1440 bp
Protein Length:479 aa
Strand:-
Location:C08: 21439819 : 21443687
Gene CDSs(6): 1-429 | 520-747 | 1213-1337 | 1488-1702 | 1808-1901 | 3521-3869 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 229 238 NANot foundNot found
Segsegseg 450 468 NANot foundNot found
PatternScanPS00063ALDOKETO_REDUCTASE_3 111 126 NAIPR018170Aldo/keto reductase, conserved site
HMMPfamPF01490Aa_trans 37 466 5.4e-161IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 27 474 6.3e-105Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q424000.0AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q7Y0770.0Q7Y077_BRANA Amino acid permease 1 OS=Brassica napus GN=aap1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
aml:1004716105e-11K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G10010.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G58360.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT5G49630.1
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol006986
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031230
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031231
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031232
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036772
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036773
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036774
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol044090
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol045048
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra017905
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra019969
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra027868
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031695
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031697
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra035446
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra039735
ORTHOMCL577(25 genes,7 taxa):Vitis viniferaGSVIVT01009260001
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-01
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-02
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-03
ORTHOMCL577(25 genes,7 taxa):Populus trichocarpaPOPTR_0009s08840.1
ORTHOMCL577(25 genes,7 taxa):Sorghum bicolorSb02g002440.1
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes
Compared to A.thaliana Compared to B.rapa
Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:21298773..21502336 (-)A.thalianaChr1:21662916..21868708 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:21174904..21922281 (+)B.rapaA08:2109335..2411961 (-)30
Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
DAT1G583602167653021680502Chr1Subgenome_III(LF)7
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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