Basic Information
Gene Model:Bol006156
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000285
Sequence:
 | 
Gene Structure
Nucleotide Length:2265 bp
Transcript Length:1326 bp
Protein Length:441 aa
Strand:-
Location:Scaffold000285: 406631 : 408895
Gene CDSs(7): 1-99 | 199-267 | 351-442 | 536-641 | 743-1136 | 1612-1995 | 2084-2265 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 263 272 NANot foundNot found
Segsegseg 367 381 NANot foundNot found
HMMPfamPF01490Aa_trans 29 428 7.4e-161IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 19 441 1.1e-111Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not annotated by GO terms.

Swiss-Prot
Best HitE_value Description
Q9LRB50.0LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RMN00.0B9RMN0_RICCO Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1081920 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1440394e-16K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT1G24400.1
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT1G48640.1
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT1G67640.1
ORTHOMCL214(41 genes,8 taxa):Arabidopsis thalianaAT5G40780.1
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol006156
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol010472
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol012940
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol032217
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol036413
ORTHOMCL214(41 genes,8 taxa):Brassica oleraceaBol041752
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra025547
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra028477
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra030024
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra032807
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra033986
ORTHOMCL214(41 genes,8 taxa):Brassica rapaBra039087
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01001839001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010331001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010335001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010349001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010351001
ORTHOMCL214(41 genes,8 taxa):Vitis viniferaGSVIVT01010355001
ORTHOMCL214(41 genes,8 taxa):Oryza sativaOs08t0127100-01
ORTHOMCL214(41 genes,8 taxa):Oryza sativaOs08t0127100-02
ORTHOMCL214(41 genes,8 taxa):Oryza sativaOs12t0244400-01
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36330.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36330.2
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36330.3
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0001s36340.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0008s17910.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0010s06590.1
ORTHOMCL214(41 genes,8 taxa):Populus trichocarpaPOPTR_0015s10350.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb04g033960.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002230.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002240.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002250.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb07g002260.1
ORTHOMCL214(41 genes,8 taxa):Sorghum bicolorSb08g009800.1
ORTHOMCL214(41 genes,8 taxa):Carica papayaevm.TU.contig_29648.1
ORTHOMCL214(41 genes,8 taxa):Carica papayaevm.TU.contig_29648.2
ORTHOMCL214(41 genes,8 taxa):Carica papayaevm.TU.supercontig_43.6
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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