Basic Information
Gene Model:Bol005965
Gene Family:Not classified
Chromosome:Cun
Scaffold:Scaffold000288
Sequence:
 | 
Gene Structure
Nucleotide Length:1014 bp
Transcript Length:1014 bp
Protein Length:337 aa
Strand:-
Location:Scaffold000288: 134331 : 135344
Gene CDSs(1): 1-1014 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03754DUF313 174 294 3.6e-50IPR005508Protein of unknown function DUF313
Segsegseg 33 48 NANot foundNot found
Segsegseg 125 141 NANot foundNot found
ProfileScanPS50863B3 216 322 8.952IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6X01e-77Y1203_ARATH B3 domain-containing protein At1g32030 OS=Arabidopsis thaliana GN=At1g32030 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9SJ988e-18Q9SJ98_ARATH Putative uncharacterized protein At2g24670 OS=Arabidopsis thaliana GN=At2g24670 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17543(3 genes,3 taxa):Arabidopsis thalianaAT1G32030.1
ORTHOMCL17543(3 genes,3 taxa):Brassica oleraceaBol005965
ORTHOMCL17543(3 genes,3 taxa):Brassica rapaBra023229
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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