Basic Information
Gene Model:Bol004102
Gene Family:Not classified
Chromosome:Cun
Scaffold:Scaffold000330
Sequence:
 | 
Gene Structure
Nucleotide Length:2453 bp
Transcript Length:2097 bp
Protein Length:698 aa
Strand:-
Location:Scaffold000330: 27935 : 30387
Gene CDSs(5): 1-204 | 277-558 | 651-772 | 868-940 | 1038-2453 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00122E1-E2_ATPase 119 374 4.8e-84IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF00702Hydrolase 378 675 1.5e-09IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00690Cation_ATPase_N 20 100 1.5e-28IPR004014ATPase, P-type cation-transporter, N-terminal
HMMPantherPTHR11939CATION-TRANSPORTING 26 696 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF91CALCIUM-TRANSPORTING 26 696 0Not foundNot found
HMMTigrTIGR01494ATPase_P-type: ATPas 623 673 1.7e-17IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 320 400 1.1e-24IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 119 218 6.8e-22IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
superfamilySSF56784HAD-like 613 689 8.2e-13Not foundNot found
superfamilySSF81665Calcium ATPase, tran 24 376 1.6e-69Not foundNot found
superfamilySSF81660Metal cation-transpo 389 630 7.1e-49Not foundNot found
superfamilySSF81653Calcium ATPase, tran 149 263 5.4e-28Not foundNot found
HMMSmartSM00831no description 26 100 1.1e-20IPR004014ATPase, P-type cation-transporter, N-terminal
PatternScanPS00154ATPASE_E1_E2 384 390 NAIPR018303ATPase, P-type phosphorylation site
Gene3DG3DSA:2.70.150.10no description 24 244 1.3e-40Not foundNot found
Gene3DG3DSA:3.40.1110.10no description 392 633 9.1e-51Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0008152 Biological Process metabolic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
Q9XES10.0ECA4_ARATH Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2
TrEMBL
Best HitE_value Description
A0A0760.0A0A076_ARATH Endomembrane Ca2+ ATPase 4 OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G076700.0K01537E3.6.3.8Ca2+-transporting ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07670.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07810.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G10130.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT4G00900.1
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol004102
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol006517
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol007671
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol011452
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol031235
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol036766
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol041160
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra019960
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra029645
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031583
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031593
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031701
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra037404
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01009320001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025062001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025583001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01027195001
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-01
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-02
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0730800-01
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0001s23990.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0002s11820.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0009s03070.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s01500.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s09740.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g009225.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g038990.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb09g001850.1
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_114.16
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_139.2
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_142.46
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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