Basic Information
Gene Model:Bol001303
Gene Family:Not classified
Chromosome:Cun
Scaffold:Scaffold000455
Sequence:
 | 
Gene Structure
Nucleotide Length:3895 bp
Transcript Length:3477 bp
Protein Length:1158 aa
Strand:+
Location:Scaffold000455: 88990 : 92884
Gene CDSs(6): 1-1492 | 1572-2533 | 2611-2734 | 2825-3044 | 3132-3590 | 3676-3895 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 2 17 NANot foundNot found
Segsegseg 344 351 NANot foundNot found
Segsegseg 1066 1079 NANot foundNot found
superfamilySSF56784HAD-like 444 903 2.5e-36Not foundNot found
superfamilySSF81660Metal cation-transpo 464 720 1.1e-21Not foundNot found
superfamilySSF81653Calcium ATPase, tran 168 317 1.2e-18Not foundNot found
HMMPantherPTHR11939:SF14PHOSPHOLIPID-TRANSPO 2 988 0Not foundNot found
HMMPantherPTHR11939CATION-TRANSPORTING 2 988 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Gene3DG3DSA:3.40.50.1000no description 711 902 2.3e-24Not foundNot found
PatternScanPS00154ATPASE_E1_E2 459 465 NAIPR018303ATPase, P-type phosphorylation site
HMMTigrTIGR01652ATPase-Plipid: phosp 86 1132 0IPR006539ATPase, P-type, phospholipid-translocating, flippase
HMMTigrTIGR01494ATPase_P-type: ATPas 136 235 1.2e-21IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 387 478 8.2e-22IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 713 767 5.7e-20IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 830 938 2.4e-39IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPfamPF00122E1-E2_ATPase 141 413 9.1e-06IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF08282Hydrolase_3 848 874 1.3e-05IPR013200HAD superfamily hydrolase-like, type 3
Gene Ontology
GO TermGO TypeDescription
GO:0000287 Molecular Function magnesium ion binding
GO:0004012 Molecular Function phospholipid-translocating ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0015914 Biological Process phospholipid transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
P982040.0ALA1_ARATH Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WQF80.0Q0WQF8_ARATH ATPase OS=Arabidopsis thaliana GN=At5g04930 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_09432500.0K01530E3.6.3.1phospholipid-translocating ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G13210.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G17500.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G26130.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G54280.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G59820.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G68710.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G72700.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT3G25610.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT3G27870.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT5G04930.1
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol001303
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol003322
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol004013
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol009768
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol013357
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol015388
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol020026
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol023997
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol026323
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol031255
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol031426
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol034864
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol035171
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol036567
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol040422
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol042735
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol042929
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol043306
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol044116
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra004020
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra004332
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra005828
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra008042
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra009410
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra012469
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra014364
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra016040
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra017897
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra019818
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra025150
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra025307
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra026515
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra026919
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra030991
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra031711
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra035422
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01003381001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01008205001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01012005001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01013643001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01016806001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01027207001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01030172001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01032462001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01034717001
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs01t0277600-00
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326100-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326200-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326200-02
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0334700-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs05t0100600-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs05t0100600-02
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs06t0565900-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs10t0412000-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs10t0412000-02
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s11630.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s20440.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s34920.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0003s04180.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0003s04180.2
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0006s10970.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s01500.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s01520.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s11060.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s19560.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s04910.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s14270.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s25250.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0012s05450.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0012s05450.2
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0016s14500.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g022190.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036200.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036640.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036650.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb03g011170.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb07g019240.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb10g014640.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb10g022370.1
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_1.239
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_13.70
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_1552.1
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_25.77
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_5.300
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_54.37
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_86.68
Tandem Arrays
ClusterGene Num.Gene List

Note: the tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Syntenic Analysis
Orthologous Genes

Note: This gene was not anchored on pseudo-chromosomes.

Syntenic Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Genes
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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